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The Molecular Biology Toolkit (MBT) is a Java-based protein visualization and analysis toolkit. The toolkit provides classes for efficiently loading, managing and manipulating protein structure and sequence data. The MBT also provides a rich set of graphical 3D and 2D visualization components which can be easily "plugged together" to produce applications having sophisticated graphical user interfaces. Yet, with all of the GUI components provided in the toolkit, the core data i/o and manipulation classes may be used to write completely non-graphical applications (say, for implementing pure analysis codes, or, for producing a non-graphical "back end" for web-based applications).

Citations: When citing MBT, please reference J.L. Moreland, A.Gramada, O.V. Buzko, Qing Zhang and P.E. Bourne 2005 The Molecular Biology Toolkit (MBT): A Modular Platform for Developing Molecular Visualization Applications. BMC Bioinformatics, 6:21.
This project is funded as part of the National Institutes of Health PPG grant number 1-P01-GM63208 and its National Institute of General Medical Sciences (NIGMS) division.
