Hierarchy For All Packages

Package Hierarchies:

edu.sdsc.mbt, edu.sdsc.mbt.filters, edu.sdsc.mbt.gui, edu.sdsc.mbt.io, edu.sdsc.mbt.util, edu.sdsc.mbt.viewables, edu.sdsc.mbt.viewers

Class Hierarchy

• java.lang.Object
  • edu.sdsc.mbt.util.Algebra
  • edu.sdsc.mbt.util.AminoAcid
  • edu.sdsc.mbt.util.AminoAcidInfo
  • edu.sdsc.mbt.viewables.AtomColorByBFactor (implements edu.sdsc.mbt.viewables.AtomColor)
  • edu.sdsc.mbt.viewables.AtomColorByElement (implements edu.sdsc.mbt.viewables.AtomColor)
  • edu.sdsc.mbt.viewables.AtomColorByResidueColor (implements edu.sdsc.mbt.viewables.AtomColor)
  • edu.sdsc.mbt.viewables.AtomColorByRgb (implements edu.sdsc.mbt.viewables.AtomColor)
  • edu.sdsc.mbt.viewables.AtomColorRegistry
  • edu.sdsc.mbt.filters.AtomFilter (implements edu.sdsc.mbt.filters.StructureComponentFilter)
    • edu.sdsc.mbt.filters.CAlphaAtomFilter
  • edu.sdsc.mbt.viewables.AtomLabelByAtomCompound (implements edu.sdsc.mbt.viewables.AtomLabel)
  • edu.sdsc.mbt.viewables.AtomLabelByAtomElement (implements edu.sdsc.mbt.viewables.AtomLabel)
  • edu.sdsc.mbt.viewables.AtomLabelByAtomName (implements edu.sdsc.mbt.viewables.AtomLabel)
  • edu.sdsc.mbt.viewables.AtomLabelByChainId (implements edu.sdsc.mbt.viewables.AtomLabel)
  • edu.sdsc.mbt.viewables.AtomLabelByString (implements edu.sdsc.mbt.viewables.AtomLabel)
  • edu.sdsc.mbt.viewables.AtomLabelNone (implements edu.sdsc.mbt.viewables.AtomLabel)
  • edu.sdsc.mbt.viewables.AtomLabelRegistry
  • edu.sdsc.mbt.viewables.AtomRadiusByConstant (implements edu.sdsc.mbt.viewables.AtomRadius)
  • edu.sdsc.mbt.viewables.AtomRadiusByCpk (implements edu.sdsc.mbt.viewables.AtomRadius)
  • edu.sdsc.mbt.viewables.AtomRadiusByScaledCpk (implements edu.sdsc.mbt.viewables.AtomRadius)
  • edu.sdsc.mbt.viewables.AtomRadiusRegistry
  • edu.sdsc.mbt.util.AtomStats
  • edu.sdsc.mbt.viewables.BondColorByAtomColor (implements edu.sdsc.mbt.viewables.BondColor)
  • edu.sdsc.mbt.viewables.BondColorByElement (implements edu.sdsc.mbt.viewables.BondColor)
  • edu.sdsc.mbt.viewables.BondColorRegistry
  • edu.sdsc.mbt.util.BondFactory
  • edu.sdsc.mbt.viewables.BondFormOrder (implements edu.sdsc.mbt.viewables.BondForm)
  • edu.sdsc.mbt.viewables.BondFormRegistry
  • edu.sdsc.mbt.viewables.BondFormSimple (implements edu.sdsc.mbt.viewables.BondForm)
  • edu.sdsc.mbt.viewables.BondFormSplit (implements edu.sdsc.mbt.viewables.BondForm)
  • edu.sdsc.mbt.util.BondInfo
  • edu.sdsc.mbt.viewables.BondLabelByDistance (implements edu.sdsc.mbt.viewables.BondLabel)
  • edu.sdsc.mbt.viewables.BondLabelByString (implements edu.sdsc.mbt.viewables.BondLabel)
  • edu.sdsc.mbt.viewables.BondLabelByType (implements edu.sdsc.mbt.viewables.BondLabel)
  • edu.sdsc.mbt.viewables.BondLabelNone (implements edu.sdsc.mbt.viewables.BondLabel)
  • edu.sdsc.mbt.viewables.BondLabelRegistry
  • edu.sdsc.mbt.viewables.BondRadiusAsWire (implements edu.sdsc.mbt.viewables.BondRadius)
  • edu.sdsc.mbt.viewables.BondRadiusByAtomRadius (implements edu.sdsc.mbt.viewables.BondRadius)
  • edu.sdsc.mbt.viewables.BondRadiusByScaledAtomRadius (implements edu.sdsc.mbt.viewables.BondRadius)
  • edu.sdsc.mbt.viewables.BondRadiusRegistry
  • edu.sdsc.mbt.util.BrowserLauncher
  • edu.sdsc.mbt.viewables.ChainColorById (implements edu.sdsc.mbt.viewables.ChainColor)
  • edu.sdsc.mbt.viewables.ChainColorRegistry
  • edu.sdsc.mbt.viewables.ChainFormRegistry
  • edu.sdsc.mbt.util.ChemicalComponentBonds
  • edu.sdsc.mbt.io.CifStructureLoader (implements edu.sdsc.mbt.io.FileStructureLoader)
  • edu.sdsc.mbt.util.CodonInfo
  • edu.sdsc.mbt.gui.ColorMapDialog.MapUse
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • edu.sdsc.mbt.gui.ElementStylesEditor.PtButton
        • javax.swing.JFileChooser (implements javax.accessibility.Accessible)
          • edu.sdsc.mbt.gui.ImageFileManager
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • edu.sdsc.mbt.viewers.ProgressPanel
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • edu.sdsc.mbt.gui.ElementStylesEditor
          • edu.sdsc.mbt.viewers.GlStructureViewer (implements edu.sdsc.mbt.viewers.GlStructureViewerImpl.GlPickEventListener, edu.sdsc.mbt.viewables.StructureStylesEventListener, edu.sdsc.mbt.viewers.Viewer)
          • edu.sdsc.mbt.gui.InterpolatedColorMapEditor (implements java.awt.event.FocusListener)
          • edu.sdsc.mbt.viewers.SequenceViewer (implements edu.sdsc.mbt.viewers.Viewer)
          • edu.sdsc.mbt.viewers.SequenceViewerPanel (implements edu.sdsc.mbt.viewables.StructureStylesEventListener)
          • edu.sdsc.mbt.viewers.StatusPanel (implements edu.sdsc.mbt.util.StatusListener)
          • edu.sdsc.mbt.viewers.StructureComponentInspector (implements edu.sdsc.mbt.viewables.StructureStylesEventListener, edu.sdsc.mbt.viewers.Viewer)
          • edu.sdsc.mbt.viewers.StructureViewer (implements edu.sdsc.vis.viewers.PickListener, edu.sdsc.mbt.viewables.StructureStylesEventListener, edu.sdsc.mbt.viewers.Viewer)
          • edu.sdsc.mbt.gui.StructureViewerPrefs
          • edu.sdsc.mbt.gui.StyleEditor
          • edu.sdsc.mbt.viewers.TreeViewer (implements edu.sdsc.mbt.viewables.StructureStylesEventListener, javax.swing.event.TreeSelectionListener, edu.sdsc.mbt.viewers.Viewer)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • edu.sdsc.mbt.gui.ColorChooserDialog
            • edu.sdsc.mbt.gui.ColorMapDialog
            • edu.sdsc.mbt.gui.DepthCueDialog (implements edu.sdsc.mbt.viewers.Viewer)
            • edu.sdsc.mbt.gui.ElementStylesEditorDialog
            • edu.sdsc.mbt.gui.ProgressDialog (implements edu.sdsc.mbt.util.StatusListener)
            • edu.sdsc.mbt.gui.StyleEditorDialog
  • edu.sdsc.mbt.util.DerivedInformation
  • edu.sdsc.mbt.util.Element
  • edu.sdsc.mbt.viewables.ElementStyles
  • edu.sdsc.mbt.gui.ElementStylesEditor.PtListener (implements java.awt.event.ActionListener)
  • edu.sdsc.mbt.io.FastaStructureLoader (implements edu.sdsc.mbt.io.FileStructureLoader)
  • edu.sdsc.mbt.viewables.FragmentFormCartoon (implements edu.sdsc.mbt.viewables.FragmentForm)
  • edu.sdsc.mbt.viewables.FragmentFormCylinder (implements edu.sdsc.mbt.viewables.FragmentForm)
  • edu.sdsc.mbt.viewables.FragmentFormLadder (implements edu.sdsc.mbt.viewables.FragmentForm)
  • edu.sdsc.mbt.viewables.FragmentFormRegistry
  • edu.sdsc.mbt.viewables.FragmentFormRibbon (implements edu.sdsc.mbt.viewables.FragmentForm)
  • edu.sdsc.mbt.viewables.FragmentFormTube (implements edu.sdsc.mbt.viewables.FragmentForm)
  • edu.sdsc.mbt.viewables.FragmentFormWireframe (implements edu.sdsc.mbt.viewables.FragmentForm)
  • edu.sdsc.mbt.viewables.InterpolatedColorMap (implements edu.sdsc.mbt.viewables.ColorMap)
  • edu.sdsc.mbt.util.NucleicAcidInfo
  • edu.sdsc.mbt.util.Octree
  • edu.sdsc.mbt.util.OctreeAtomItem (implements edu.sdsc.mbt.util.OctreeDataItem)
  • edu.sdsc.mbt.io.PdbStructureLoader (implements edu.sdsc.mbt.io.FileStructureLoader)
  • edu.sdsc.mbt.util.PeriodicTable
  • edu.sdsc.mbt.util.PickUtils
  • edu.sdsc.mbt.io.PovWriter
  • edu.sdsc.mbt.util.RangeMap
  • edu.sdsc.mbt.io.RcsbStructureLoader (implements edu.sdsc.mbt.io.BatchStructureLoader)
  • edu.sdsc.mbt.filters.RelationFilter (implements edu.sdsc.mbt.filters.StructureComponentFilter)
  • edu.sdsc.mbt.viewables.ResidueColorByFragmentType (implements edu.sdsc.mbt.viewables.ResidueColor)
  • edu.sdsc.mbt.viewables.ResidueColorByHydrophobicity (implements edu.sdsc.mbt.viewables.ResidueColor)
  • edu.sdsc.mbt.viewables.ResidueColorByResidueIndex (implements edu.sdsc.mbt.viewables.ResidueColor)
  • edu.sdsc.mbt.viewables.ResidueColorByRgb (implements edu.sdsc.mbt.viewables.ResidueColor)
  • edu.sdsc.mbt.viewables.ResidueColorRegistry
  • edu.sdsc.mbt.util.SharedObjects
  • edu.sdsc.mbt.util.Status
  • edu.sdsc.mbt.util.StatusEvent
  • edu.sdsc.mbt.util.StringLib
  • edu.sdsc.mbt.Structure
  • edu.sdsc.mbt.StructureComponent (implements java.lang.Cloneable)
    • edu.sdsc.mbt.Atom (implements java.lang.Cloneable)
    • edu.sdsc.mbt.Bond (implements java.lang.Cloneable)
    • edu.sdsc.mbt.Chain (implements java.lang.Cloneable)
    • edu.sdsc.mbt.Conformation (implements java.lang.Cloneable)
      • edu.sdsc.mbt.Coil (implements java.lang.Cloneable)
      • edu.sdsc.mbt.Helix (implements java.lang.Cloneable)
      • edu.sdsc.mbt.Strand (implements java.lang.Cloneable)
      • edu.sdsc.mbt.Turn (implements java.lang.Cloneable)
    • edu.sdsc.mbt.Fragment (implements java.lang.Cloneable)
    • edu.sdsc.mbt.Residue (implements java.lang.Cloneable)
    • edu.sdsc.mbt.Symmetry (implements java.lang.Cloneable)
  • edu.sdsc.mbt.StructureComponentEvent
  • edu.sdsc.mbt.StructureComponentIterator
  • edu.sdsc.mbt.StructureComponentRegistry
  • edu.sdsc.mbt.StructureComponentRelation
    • edu.sdsc.mbt.Relation_Conformation_Atom
  • edu.sdsc.mbt.viewables.StructureDocument
  • edu.sdsc.mbt.viewables.StructureDocumentEvent
  • edu.sdsc.mbt.io.StructureFactory
  • edu.sdsc.mbt.StructureInfo
  • edu.sdsc.mbt.StructureMap
  • edu.sdsc.mbt.viewables.StructureStyles
  • edu.sdsc.mbt.viewables.StructureStylesEvent
  • edu.sdsc.mbt.viewables.Style (implements java.lang.Cloneable)
    • edu.sdsc.mbt.viewables.AtomStyle (implements java.lang.Cloneable)
    • edu.sdsc.mbt.viewables.BondStyle (implements java.lang.Cloneable)
    • edu.sdsc.mbt.viewables.ChainStyle (implements java.lang.Cloneable)
    • edu.sdsc.mbt.viewables.ResidueStyle (implements java.lang.Cloneable)
  • edu.sdsc.mbt.io.TestStructureLoader (implements edu.sdsc.mbt.io.BatchStructureLoader, edu.sdsc.mbt.io.FileStructureLoader)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • edu.sdsc.mbt.util.ExcessiveDivisionException
  • edu.sdsc.mbt.viewers.ViewUtils
  • edu.sdsc.mbt.viewables.VisibilityHide (implements edu.sdsc.mbt.viewables.Visibility)
  • edu.sdsc.mbt.viewables.VisibilityRegistry
  • edu.sdsc.mbt.viewables.VisibilityShow (implements edu.sdsc.mbt.viewables.Visibility)

Interface Hierarchy

• edu.sdsc.mbt.viewables.AtomColor
• edu.sdsc.mbt.viewables.AtomLabel
• edu.sdsc.mbt.viewables.AtomRadius
• edu.sdsc.mbt.viewables.BondColor
• edu.sdsc.mbt.viewables.BondForm
• edu.sdsc.mbt.viewables.BondLabel
• edu.sdsc.mbt.viewables.BondRadius
• edu.sdsc.mbt.viewables.ChainColor
• edu.sdsc.mbt.viewables.ColorMap
• edu.sdsc.mbt.viewables.FragmentForm
• edu.sdsc.mbt.util.OctreeDataItem
• edu.sdsc.mbt.viewables.ResidueColor
• edu.sdsc.mbt.util.StatusListener
• edu.sdsc.mbt.StructureComponentEventListener
• edu.sdsc.mbt.filters.StructureComponentFilter
• edu.sdsc.mbt.io.StructureLoader
  • edu.sdsc.mbt.io.BatchStructureLoader
  • edu.sdsc.mbt.io.FileStructureLoader
• edu.sdsc.mbt.viewables.StructureStylesEventListener
• edu.sdsc.mbt.viewers.Viewer
• edu.sdsc.mbt.viewables.Visibility